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SRM Supercomputer Center

Computational Science and Engineering

Acknowledgment: Authors thank SRM Supercomputer Center, SRM Institute of Science and Technology for providing the computational facility

Applications and Compilers

 

 Applications:

  • Vasp
  • Quantum espresso
  • CP2K
  • Matlab
  • Wien2k
  • SILVACO
  • Miniconda 2 and 3
  • CNVnator
  • ROOT
  • WRF
  • SBDART Model
  • ROMSAF
  • WACCM
  • NCL
  • RT Model
  • Schrodinger
  • Gaussian
  • Lammps
  • Gromacs
  • SciLab
  • ANSYS

Tools:

  • Sam tools
  • Bam tools
  • bcf tools
  • FastQC
  • Graphviz
  • Picard
  • Sickle
  • Cutadapt
  • FASTX

Compilers: 

  • OpenMPI
  • MPICH
  • Javac
  • Cmake

 Assemblers:

    • All Paths
    • Celera
    • Ray
    • SSPACE
    • Velvet
    • Velvet Optimiser 
    • Trinity
    • SGA
    • SOAP denovo
    • SOAP denovo-Trans
    • Edena
    • Trans-Abyss
    • Oases
    • Cap3
    • CNVnator
    • Annovar
    • Annocript
    • SPADES

    Interpreters and Runtime Environments:

    • R
    • Python
    • Bio Python
    • Bio conductor
    • Perl
    • Bio Perl
    • Java
    • Numpy

    Scientific Libraries:

    • LAPACK
    • BLAS
    • FFTW
    • SCALAPACK
    • HDF5